Hi bmelcanco,
I wouldn't do anything to your current batch, it should be fine. There is a greater risk of introducing contaminants by uncorking and recorking than there is if you just leave them alone.
Corks which comes directly from the manufacturer are usually sealed in a bag (typically of 1,000) and have SO2 in the bag to protect them. They also have the correct moisture content. Many times they have a very fine paraffin or silicon coating to ease their introduction into the bottle. They may come with instructions saying to insert them dry.
Boiling or long soaking can remove that coating and make it more difficult to insert the cork and may lead to damaging the cork during insertion. Boiling may damage corks and make them unusable if done with enough intensity (done that). It may also change the moisture content of the cork and lead to reduced resiliency and a less effective seal against the glass. Increased moisture may lead to crumbling and caused a shortened cork life. Soaking in a strong sulfite solution can actually cause some breakdown of the material that makes up the cork.
With all that said, since I don't usually get my corks in bags of 1,000, they have already been taken out of the original package and I generally will give them a brief rinse in some sanitizer (hey, I don't know where those corks have been

). Is it absolutely necessary? Probably not. Is it potentially harmful? Possibly. Still, that is what I usually do, and it seems to work. When I have put corks in that were not sanitized, I have not noticed any problems.
I hope that helps.
Medsen
Pasyans bel, lavi long.
(Beautiful patience, long life.)